Polaris
=======
.. .. image:: _static/logo.png
..    :alt: Polaris Logo
..    :width: 221px
..    :height: 50px

**Polaris** is a versatile and efficient command line tool tailored for rapid and accurate chromatin loop detectionfrom from contact maps generated by various assays, including bulk Hi-C, scHi-C, Micro-C, and DNA SPRITE.

Polaris is particularly well-suited for analyzing sparse scHi-C data and low-coverage datasets.

Follow Polaris development on `GitHub <https://github.com/ai4nucleome/Polaris>`_.

Contents:

.. toctree::
   :maxdepth: 2

   qucikstart.rst
   polaris.rst
   examples.rst
   CLI_reference.rst

.. Indices and tables
.. ==================

* :ref:`genindex`

.. * :ref:`modindex`
.. * :ref:`search`